I'll possibly get around to linking these to amazon entries at some point. This list is now many years out of date!

O'Reilly books.

• ASP in a nutshell. - A. Keyton Weissinger
• Building Internet Firewalls - Elizabeth D. Zwicky, Simon Cooper, & D. Brent Chapman
• Checking C Programs with lint - Ian F. Darwin
• Computer Crime -
• C++: The Core Language - Gregory Satir & Doug Brown
• Database Nation - Simson Garfinkel
• Database Programming with JDBC and Java - George Reese
• Developing ASP Components - Shelley Powers
• DNS and Bind - Paul Albitz & Cricket Liu
• Essential System Administration, 2nd Edition - AEleen Frisch
• Frontier: The Definitive Guide - Matt Neuberg
• Java and XML - Brett McLaughlin
• Java in a Nutshell, 3rd Edition - David Flanagan
• Java Enterprise in a Nutshell - David Flanagan, Jim Farley, William Crawford & Kris Magnusson
• Java Examples in a Nutshell - David Flanagan
• Java Foundation Classes in a Nutshell - David Flanagan
• Java Servlet Programming - Jason Hunter with William Crawford
• Java Security - Scott Oaks
• Javascript Pocket Reference - David Flanagan
• Learning Perl/Tk - Nancy Walsh
• Learning Python - Mark Lutz & David Ascher
• Lex & yacc - John R. Levine, Tony Mason & Doug Brown
• Mastering Algorithms with C - Kyle Loudon
• Porting UNIX Software - Greg Lehey
• POSIX Programmer's Guide - Donald Lewine
• Practical UNIX & Internet Security, 2nd Edition - Simson Garfinkel & Gene Spafford
• Programming Perl, 2nd Edition - Larry Wall, Tom Christiansen & Jon OrwantLarry Wall, Tom Christiansen & Jon Orwant
• Programming the Perl DBI - Alligator Descartes & Tim Bunce
• TCL/TK in a Nutshell - Paul Raines & Jeff Tranter
• UNIX in a Nutshell: System V Edition, 3rd Edition - Arnold Robbins
• UNIX Systems Programming for SVR4 - David A. Curry
• VBScript Pocket Reference - Matt Childs, Paul Lomax & Ron Petrusha
• Web Security, Privacy and Commerce, 2nd Edition - Simson Garfinkel
• XML Pocket Reference - Robert Eckstein

Prentice Hall

• AIX for Unix professionals - Bonnie L. Miller
• Assembly Language for the PC - John Socha & Peter Norton
• Compiling for the .NET Common Language Runtime - John Gough
• Computing Calamities - Robert L. Glass
• Expert C Programming: Deep C secrets - Peter Van Der Linden
• Information Security - Donald Pipkin
• Just Java 2 - Peter Van Der Linden
• Logic and Language Models for Computer Science - Henry Hamburger & Dana Richards
• Network Security Essentials - William Stallings
• Program Generators with XML and Java - J. Craig Cleaveland
• Safety-Critical Computer Systems - Neil Storey
• Security in Computing - Charles P. Pfleeger
• Solaris Security - Peter H. Gregory
• Solaris System Administrators Guide - Janice Winsor
• Solid Software - Shari Lawrence Pfleeger, Les Hatton & Charles C. Howell
• The Algebra of Programming - Richard Bird, Oege De Moor
• Unix Internals, The New Frontiers - Uresh Vahalia

Addison-Wesley

• A Practical Guide to Testing Object-oriented Software - John D. Mcgregor, David A. Sykes
• Accelerated C++ - Andrew Koenig & Barbara Moo
• Advanced programming in the UNIX Environment - W. Richard Stevens
• Building Secure Software - John Viega, Gary McGraw
• Computer Security: Art and Science - Matthew Bishop
• Computer Science: an Overview - Glenn J. Brookshear
• CORBA Security. An introduction to safe computing with objects - Bob Blakley
• Design Patterns. Elements of Reusable Object-Oriented Software - Erich Gamma, Richard Helm, Ralph Johnson & John Vlissides
• Effective C++ Second Edition - Scott Meyers
• Effective Perl Programming - Joseph N. Hall & Randal L. Schwartz
• How to Break Software. A practical guide to testing - James A. Whittaker
• Inside Java 2 Platform Security - Li Gong
• IT Architecture and Middleware. Strategies for Building Large, Integrated Systems - Chris Britton
• Large Scale C++ Software Design - John Lakos
• Managing Information Security Risks; The OCTAVE Approach - Christopher Alberts & Audrey Dorofee
• Managing Risk; Methods for Software Systems Development - Elaine M. Hall
• Modelling and Analysis of Cryptographic protocols - Peter Ryan & Steve Schneider
• Peer Reviews in Software: A practical guide - Karl E. Wiegers
• Programming Windows Security - Keith Brown
• Prolog Programming for Artificial Intelligence - Ivan Bratko
• Safeware; System Safety and Computers - Nancy G. Leveson
• Software Inspection - Tom Gilb, Dorothy Graham
• The Mythical Man-month - Frederick P. Brooks
• The Pragmatic Programmer - Andrew Hund & David Thomas
• UNIX Internals. A Practical Approach - Steve D Pate
• UNIX System Programming - Keith Haviland & Ben Salama

McGraw Hill

• Computers in Communication - Gordon Brebner
• Hacking Exposed - Stuart McClure, Joel Scambray & George Kurtz
• Java Certification Exam Guide - Barry Boone
• Safer C: Developing Software for High-integrity and Safety-critical Systems - Les Hatton
• Solaris 2.x System Administrator's Guide - S. Lee Henry

New Riders

• Incident Response. A Strategic Guide to Handling System and Network Security Breaches - E. Eugene Schultz & Russell Shumway
• Intrusion Detection - Rebecca Bace
• Policy-Based Networking - Dinesh Verma
• Writing Information Security Policies - Scott Barman

Que

• Tangled Web: Tales of Digital Crime from the Shadows of Cyberspace - Richard Power
• Windows NT Server 4 Security Handbook - Lee Hadfield, Dave Hatter, Dave Bixler

Springer Verlag

• A Concise Approach to Mathematical Analysis - Mangatiana Robdera
• A Logical Approach to Discrete Mathematics - D. Gries & Fred B. Schneider
• A Topological Aperitif - Stephen Huggett, David Jordan
• Complex Analysis - John Howie
• Correct System Design: Recent Insights and Advances - Ernst-Rudiger Olderog, Bernhard Steffen (Eds.)
• Developing Trust: Online Privacy and Security - Matt Curtin
• Elementary Analysis: The Theory of Calculus - Kenneth A. Ross;
• Geometry - Roger Fenn
• Geometry (Universitext) - M. Audin
• Introduction to Cryptography - Johannes Buchmann
• Introduction to Languages, Machines, and Logic - Alan P. Parkes
• Introduction to Mathematical Systems Theory: A Behavioral Approach - J.C. Willems, J.W. Polderman
• Introductory Mathematics: Algebra and Analysis - Geoff Smith
• Linear Algebra - Serge Lang
• Mathematical Foundations of Programming Language Semantics - M. Main (Editor), et al
• Number Theory for Computing - Song Y Yan
• Principles of Program Analysis - Flemming Nielson, Hanne Riis Nielson, Chris Hankin
• Programming Methodology (Monographs in Computer Science) - Annabelle McIver (Editor), Carroll Morgan (Editor)
• Proofs from THE BOOK - M. Aigner, G.M. Ziegler
• Secure Internet Programming - Jan Vitek & Christian D. Jensen (Ed.)
• Security Protocols
• Software Quality Approaches: Testing, Verification and Validation - M. Haug (Editor), E.W. Olsen (Editor), L. Consolini (Editor)
• Static Analysis - Jens Palsberg (Ed.)
• Symmetry and Groups - M.A. Armstrong
• Testing Object-Oriented Software: Life Cycle Solutions - Imran Bashir & Amrit L. Goel
• The Interpretation of Object-Oriented Programming Languages; 2nd Edition - Iain Craig
• What Computing is All About - Jan L.A. van de Snepscheut

Wiley

• Client/Server Programming with Java and Corba - Robert Orfali & Dan Harkey
• Computer Security Handbook - Bosworth
• Designing Security Architecture Solutions - Jay Ramachandran
• E-Commerce Security - Anup K. Ghosh
• Java Security Solutions - Richard Helton, Johennie Helton
• Managing Software Quality and Business Risk - Martyn Ould
• Modern Compiler Design - D. Grune, H. Bal, C. Jacobs, K. Langendoen
• Software Engineering. An Object-Oriented Perspective - Eric J. Braude
• Software Fault Injection: Inoculating Programs Against Errors - Jeffrey M. Voas and Gary McGraw
• Systems Design in the Fourth Generation - John A Lehman
• Testing Web Security - Steven Splaine

MIT Press

• Basic Category Theory for Computer Scientists - Benjamin C. Pierce
• Control Flow Semantics - Jaco de Bakker, Eric de Vink
• Essentials of Programming Languages - Daniel P. Friedman, Christopher T. Haynes, Michael Wand
• Structure and Interpretation of Computer Programs - H. Abelson
• The Formal Semantics of Programming Languages. An Introduction - Glynn Winskel
• Types and Programming Languages - Benjamin C. Pierce

Microsoft Press

• Designing Secure Web-Based Applications for Microsoft Windows 2000 - Michael Howard with Marc Levy and Richard Waymire
• Writing Secure Code - Michael Howard & David Le Blanc
• Writing Solid Code - Steve Maguire

Misc

• A complete H@cker's Handbook - Dr-K
• A Course of Pure Mathematics - G.H. Hardy
• A Practical Guide to Security Engineering and Information Assurance - Debra S. Herrmann
• An Introduction to the Theory of Numbers - G. H. Hardy, E. M. Wright
• Active Defense: a Comprehensive Guide to Network Security - Chris Brenton
• Building an Information Security Awareness Program - Mark B. Desman
• Codes and Cryptography - Dominic Welsh
• Crash: Ten easy ways to avoid a computer disaster - Tony Collins
• Cryptanalysis. a study of ciphers and their solutions - Helen Fouche Gaines
• Data Analysis for Database Design - D.R. Howe
• Developing Java Servlets - James Goodwill
• Discrete Mathematics for Computing - Peter Grossman
• Electronic Surveillance Devices - Paul Brookes
• Elementary Matrix Theory - Howard Eves
• Elementary Real and Complex Analysis - Georgi E. Shilov
• Handbook of Walkthroughs, Inspections, and Technical Reviews : Evaluating Programs, Projects, and Products - Daniel P. Freedman, Gerald M. Weinberg
• Information Security Risk Analysis - Thomas R. Peltier
• Java Security Handbook - Jamie Jaworski
• Linear Algebra - Georgi E. Shilov
• Logic in Computer Science: Modelling and reasoning about systems - Michael R A Huth & Mark D Ryan
• Logic, Sets, and Recursion; Revised Edition - Robert L. Causey
• Maximum Security - Anonymous
• Matrices and Linear Algebra - Hans Schneider & George Philip Barker
• Modern Compiler Implementation in C - Andrew W. Appel
• Numbers, Groups and Codes - J. F. Humphreys, M. Y. Prest
• Operating Systems incorporating UNIX & Windows - Colin Ritchie
• The Prime Number Theorem - G. J. O. Jameson
• Silent Warfare - Abram N. Shulsky, Gary J. Schmitt
• Software Metrics: A Rigorous & Practical Approach - Norman E. Fenton & Shari Lawrence Pfleeger
• Structured Development of Parallel Programs - Susanna Pelagatti
• Teach yourself Java 1.2 in 21 days
• The Haskell School of Expression - Paul Hudak
• The Speed reading book - Tony Buzan
• Theories of Programming Languages - John C. Reynolds
• Time Based Security - Winn Schwartau
• Unix and C : A Tutorial Introduction - P. Cornes
• Virtual Machine Design and Implementation in C/C++ - Bill Blunden
• XML, A Primer - Simon St. Laurent